🍩 Database of Original & Non-Theoretical Uses of Topology

(found 3 matches in 0.001692s)

  1. Topological Biomarkers for Real-Time Detection of Epileptic Seizures (2022)

    Ximena Fernández, Diego Mateos
    Abstract Automated seizure detection is a fundamental problem in computational neuroscience towards diagnosis and treatment's improvement of epileptic disease. We propose a real-time computational method for automated tracking and detection of epileptic seizures from raw neurophysiological recordings. Our mechanism is based on the topological analysis of the sliding-window embedding of the time series derived from simultaneously recorded channels. We extract topological biomarkers from the signals via the computation of the persistent homology of time-evolving topological spaces. Remarkably, the proposed biomarkers robustly captures the change in the brain dynamics during the ictal state. We apply our methods in different types of signals including scalp and intracranial EEG and MEG, in patients during interictal and ictal states, showing high accuracy in a range of clinical situations.

  2. Topological Analysis of Low Dimensional Phase Space Trajectories of High Dimensional EEG Signals for Classification of Interictal Epileptiform Discharges (2023)

    A. Stiehl, M. Flammer, F. Anselstetter, N. Ille, H. Bornfleth, S. Geißelsöder, C. Uhl
    Abstract A new topology based feature extraction method for classification of interictal epileptiform discharges (IEDs) in EEG recordings from patients with epilepsy is proposed. After dimension reduction of the recorded EEG signal, using dynamical component analysis (DyCA) or principal component analysis (PCA), a persistent homology analysis of the resulting phase space trajectories is performed. Features are extracted from the persistent homology analysis and used to train and evaluate a support vector machine (SVM). Classification results based on these persistent features are compared with statistical features of the dimension-reduced signals and combinations of all of these features. Combining the persistent and statistical features improves the results (accuracy 94.7 %) compared to using only statistical feature extraction, whereas applying only persistent features does not achieve sufficient performance. For this classification example the choice of the dimension reduction technique does not significantly influence the classification performance of the algorithm.

  3. Topological Data Analysis of Single-Trial Electroencephalographic Signals (2018)

    Yuan Wang, Hernando Ombao, Moo K. Chung
    Abstract Epilepsy is a neurological disorder that can negatively affect the visual, audial and motor functions of the human brain. Statistical analysis of neurophysiological recordings, such as electroencephalogram (EEG), facilitates the understanding and diagnosis of epileptic seizures. Standard statistical methods, however, do not account for topological features embedded in EEG signals. In the current study, we propose a persistent homology (PH) procedure to analyze single-trial EEG signals. The procedure denoises signals with a weighted Fourier series (WFS), and tests for topological difference between the denoised signals with a permutation test based on their PH features persistence landscapes (PL). Simulation studies show that the test effectively identifies topological difference and invariance between two signals. In an application to a single-trial multichannel seizure EEG dataset, our proposed PH procedure was able to identify the left temporal region to consistently show topological invariance, suggesting that the PH features of the Fourier decomposition during seizure is similar to the process before seizure. This finding is important because it could not be identified from a mere visual inspection of the EEG data and was in fact missed by earlier analyses of the same dataset.